Package: mlstrOpalr 1.0.3
Guillaume Fabre
mlstrOpalr: Support Compatibility Between 'Maelstrom' R Packages and 'Opal' Environment
Functions to support compatibility between 'Maelstrom' R packages and 'Opal' environment. 'Opal' is the 'OBiBa' core database application for biobanks. It is used to build data repositories that integrates data collected from multiple sources. 'Opal Maelstrom' is a specific implementation of this software. This 'Opal' client is specifically designed to interact with 'Opal Maelstrom' distributions to perform operations on the R server side. The user must have adequate credentials. Please see <https://opaldoc.obiba.org/> for complete documentation.
Authors:
mlstrOpalr_1.0.3.tar.gz
mlstrOpalr_1.0.3.zip(r-4.5)mlstrOpalr_1.0.3.zip(r-4.4)mlstrOpalr_1.0.3.zip(r-4.3)
mlstrOpalr_1.0.3.tgz(r-4.4-any)mlstrOpalr_1.0.3.tgz(r-4.3-any)
mlstrOpalr_1.0.3.tar.gz(r-4.5-noble)mlstrOpalr_1.0.3.tar.gz(r-4.4-noble)
mlstrOpalr_1.0.3.tgz(r-4.4-emscripten)mlstrOpalr_1.0.3.tgz(r-4.3-emscripten)
mlstrOpalr.pdf |mlstrOpalr.html✨
mlstrOpalr/json (API)
NEWS
| # Install 'mlstrOpalr' in R: |
| install.packages('mlstrOpalr', repos = c('https://maelstrom-research.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/maelstrom-research/mlstropalr/issues
- valueType_list - Built-in tibble of allowed valueType values
Last updated 5 months agofrom:fbb2a0f476. Checks:OK: 7. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Aug 30 2024 |
| R-4.5-win | OK | Aug 30 2024 |
| R-4.5-linux | OK | Aug 30 2024 |
| R-4.4-win | OK | Aug 30 2024 |
| R-4.4-mac | OK | Aug 30 2024 |
| R-4.3-win | OK | Aug 30 2024 |
| R-4.3-mac | OK | Aug 30 2024 |
Exports:data_dict_opalr_fixmlstrOpalr_helpopal_files_pullopal_files_pushopal_project_createopal_tables_pullopal_tables_pushtaxonomy_opal_gettaxonomy_opal_mlstr_get
Dependencies:askpassbase64encbitbit64bookdownbslibcachemcellrangerclicliprcolorspacecpp11crayoncredentialscrosstalkcurldescdigestdplyrDTevaluatefabRfansifarverfastmapfontawesomeforcatsfsgenericsgertggplot2ghgitcredsgluegtablehavenhighrhmshtmltoolshtmlwidgetshttpuvhttrhttr2iniisobandjaneaustenrjanitorjquerylibjsonliteknitrlabelinglabelledlaterlatticelazyevallifecyclelubridatemadshapRmagrittrMASSMatrixmemoisemgcvmimemunsellnlmeopalropensslpillarpkgconfigprettyunitsprogresspromisespurrrR6rappdirsRColorBrewerRcppreadrreadxlrematchrlangrmarkdownrprojrootrstudioapisassscalessnakecaseSnowballCstringistringrsystibbletidyrtidyselecttidytexttimechangetinytextokenizerstzdbusethisutf8vctrsviridisLitevroomwhiskerwithrwritexlxfunyamlzip
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Transform a data dictionary object from 'opalr' format to Opal format | data_dict_opalr_fix |
| Call the help center for full documentation | mlstrOpalr_help |
| Download files from an Opal environment | opal_files_pull |
| Upload files to an Opal environment | opal_files_push |
| Create a project in an Opal environment | opal_project_create |
| Download tables from an Opal project as a dossier | opal_tables_pull |
| Upload datasets into an Opal environment as tables in an Opal project | opal_tables_push |
| Get available taxonomies in format used by Opal | taxonomy_opal_get |
| Get available taxonomies in format used by Maelstrom Research | taxonomy_opal_mlstr_get |
| Built-in tibble of allowed valueType values | valueType_list |
