{
  "_id": "6a3a3a3a6265ec60d6209593",
  "Package": "mlstrOpalr",
  "Type": "Package",
  "Title": "Support Compatibility Between 'Maelstrom' R Packages and 'Opal'\nEnvironment",
  "Version": "1.0.3",
  "Authors@R": "c(person(given = \"Guillaume\",\nfamily = \"Fabre\",\nrole = c(\"aut\",\"cre\"),\nemail = \"guijoseph.fabre@gmail.com\",\ncomment = c(ORCID = \"0000-0002-0124-9970\")),\nperson(\"Maelstrom-research group\",\nrole=c(\"fnd\",\"cph\"),\nemail=\"info@maelstrom-research.org\"),\nperson(\"OBiBa group\",\nrole=\"ctb\",\nemail=\"info@obiba.org\"))",
  "Maintainer": "Guillaume Fabre <guijoseph.fabre@gmail.com>",
  "Description": "Functions to support compatibility between 'Maelstrom' R\npackages and 'Opal' environment. 'Opal' is the 'OBiBa' core\ndatabase application for biobanks. It is used to build data\nrepositories that integrates data collected from multiple\nsources. 'Opal Maelstrom' is a specific implementation of this\nsoftware. This 'Opal' client is specifically designed to\ninteract with 'Opal Maelstrom' distributions to perform\noperations on the R server side. The user must have adequate\ncredentials. Please see <https://opaldoc.obiba.org/> for\ncomplete documentation.",
  "License": "GPL-3",
  "LazyData": "true",
  "URL": "https://github.com/maelstrom-research/mlstrOpalr",
  "BugReports": "https://github.com/maelstrom-research/mlstrOpalr/issues",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.2.3",
  "VignetteBuilder": "knitr",
  "Encoding": "UTF-8",
  "Language": "en-US",
  "Config/pak/sysreqs": "cmake git make libgit2-dev libicu-dev libuv1-dev\nlibssl-dev libx11-dev zlib1g-dev",
  "Repository": "https://maelstrom-research.r-universe.dev",
  "Date/Publication": "2024-05-02 16:18:05 UTC",
  "RemoteUrl": "https://github.com/maelstrom-research/mlstropalr",
  "RemoteRef": "HEAD",
  "RemoteSha": "fbb2a0f47646a0e0a727b26ce96a14a0c3d689df",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-06-23 07:44:33 UTC",
    "User": "root"
  },
  "Author": "Guillaume Fabre [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-0124-9970>),\nMaelstrom-research group [fnd, cph],\nOBiBa group [ctb]",
  "MD5sum": "18e4b56719a030d3b520c7c23c77396a",
  "_user": "maelstrom-research",
  "_type": "src",
  "_file": "mlstrOpalr_1.0.3.tar.gz",
  "_fileid": "9a76922cc3cc99998cc58d2868db2cefc45e2bf9199da1ac11eb32d55a1f127a",
  "_filesize": 136942,
  "_sha256": "9a76922cc3cc99998cc58d2868db2cefc45e2bf9199da1ac11eb32d55a1f127a",
  "_created": "2026-06-23T07:44:33.000Z",
  "_published": "2026-06-23T07:48:10.711Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 82902619342,
      "time": 181,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7814558712"
    },
    {
      "job": 82902619380,
      "time": 158,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7814549902"
    },
    {
      "job": 82902619329,
      "time": 127,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7814539399"
    },
    {
      "job": 82902619340,
      "time": 117,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7814536082"
    },
    {
      "job": 82902101411,
      "time": 189,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7814496838"
    },
    {
      "job": 82902619332,
      "time": 133,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7814541431"
    },
    {
      "job": 82902619402,
      "time": 102,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7814531523"
    },
    {
      "job": 82902619349,
      "time": 130,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7814540535"
    },
    {
      "job": 82902619378,
      "time": 113,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7814535226"
    }
  ],
  "_buildurl": "https://github.com/r-universe/maelstrom-research/actions/runs/28010414535",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/maelstrom-research/mlstropalr",
  "_commit": {
    "id": "fbb2a0f47646a0e0a727b26ce96a14a0c3d689df",
    "author": "GuiFabre <51246435+GuiFabre@users.noreply.github.com>",
    "committer": "GitHub <noreply@github.com>",
    "message": "Merge pull request #10 from maelstrom-research/testing\n\nTesting",
    "time": 1714666685
  },
  "_maintainer": {
    "name": "Guillaume Fabre",
    "email": "guijoseph.fabre@gmail.com",
    "login": "guifabre",
    "description": "",
    "uuid": 51246435,
    "orcid": "0000-0002-0124-9970"
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.4",
      "role": "Depends"
    },
    {
      "package": "dplyr",
      "version": ">= 1.1.0",
      "role": "Imports"
    },
    {
      "package": "rlang",
      "role": "Imports"
    },
    {
      "package": "tidyr",
      "role": "Imports"
    },
    {
      "package": "stringr",
      "role": "Imports"
    },
    {
      "package": "tools",
      "role": "Imports"
    },
    {
      "package": "opalr",
      "role": "Imports"
    },
    {
      "package": "fabR",
      "version": ">= 2.0.0",
      "role": "Imports"
    },
    {
      "package": "madshapR",
      "version": ">= 1.0.2",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    }
  ],
  "_owner": "maelstrom-research",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 2,
  "_contributors": [
    {
      "user": "guifabre",
      "count": 33,
      "uuid": 51246435
    },
    {
      "user": "ymarcon",
      "count": 3,
      "uuid": 2581149
    }
  ],
  "_userbio": {
    "uuid": 6654221,
    "type": "organization",
    "name": "Maelstrom Research",
    "followers": 10
  },
  "_downloads": {
    "count": 237,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/mlstrOpalr"
  },
  "_devurl": "https://github.com/maelstrom-research/mlstropalr",
  "_searchresults": 4,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/mlstrOpalr.html",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/maelstrom-research/mlstropalr",
  "_realowner": "maelstrom-research",
  "_cranurl": true,
  "_releases": [
    {
      "version": "1.0.0",
      "date": "2023-06-23"
    },
    {
      "version": "1.0.1",
      "date": "2023-07-07"
    },
    {
      "version": "1.0.2",
      "date": "2023-10-11"
    },
    {
      "version": "1.0.3",
      "date": "2024-05-01"
    }
  ],
  "_exports": [
    "data_dict_opalr_fix",
    "mlstrOpalr_help",
    "opal_files_pull",
    "opal_files_push",
    "opal_project_create",
    "opal_tables_pull",
    "opal_tables_push",
    "taxonomy_opal_get",
    "taxonomy_opal_mlstr_get"
  ],
  "_datasets": [
    {
      "name": "valueType_list",
      "title": "Built-in tibble of allowed valueType values",
      "object": "valueType_list",
      "class": [
        "tbl_df",
        "tbl",
        "data.frame"
      ],
      "fields": [
        "valueType",
        "typeof",
        "class",
        "call",
        "toValueType",
        "toTypeof",
        "genericType"
      ],
      "rows": 12,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "data_dict_opalr_fix",
      "title": "Transform a data dictionary object from 'opalr' format to Opal format",
      "topics": [
        "data_dict_opalr_fix"
      ]
    },
    {
      "page": "mlstrOpalr_help",
      "title": "Call the help center for full documentation",
      "topics": [
        "mlstrOpalr_help"
      ]
    },
    {
      "page": "opal_files_pull",
      "title": "Download files from an Opal environment",
      "topics": [
        "opal_files_pull"
      ]
    },
    {
      "page": "opal_files_push",
      "title": "Upload files to an Opal environment",
      "topics": [
        "opal_files_push"
      ]
    },
    {
      "page": "opal_project_create",
      "title": "Create a project in an Opal environment",
      "topics": [
        "opal_project_create"
      ]
    },
    {
      "page": "opal_tables_pull",
      "title": "Download tables from an Opal project as a dossier",
      "topics": [
        "opal_tables_pull"
      ]
    },
    {
      "page": "opal_tables_push",
      "title": "Upload datasets into an Opal environment as tables in an Opal project",
      "topics": [
        "opal_tables_push"
      ]
    },
    {
      "page": "taxonomy_opal_get",
      "title": "Get available taxonomies in format used by Opal",
      "topics": [
        "taxonomy_opal_get"
      ]
    },
    {
      "page": "taxonomy_opal_mlstr_get",
      "title": "Get available taxonomies in format used by Maelstrom Research",
      "topics": [
        "taxonomy_opal_mlstr_get"
      ]
    },
    {
      "page": "valueType_list",
      "title": "Built-in tibble of allowed valueType values",
      "topics": [
        "valueType_list"
      ]
    }
  ],
  "_readme": "https://github.com/maelstrom-research/mlstropalr/raw/HEAD/README.md",
  "_rundeps": [
    "askpass",
    "base64enc",
    "bit",
    "bit64",
    "bookdown",
    "bslib",
    "cachem",
    "cellranger",
    "cli",
    "clipr",
    "cpp11",
    "crayon",
    "credentials",
    "crosstalk",
    "curl",
    "desc",
    "digest",
    "dplyr",
    "DT",
    "evaluate",
    "fabR",
    "farver",
    "fastmap",
    "fontawesome",
    "forcats",
    "fs",
    "generics",
    "gert",
    "ggplot2",
    "gitcreds",
    "glue",
    "gtable",
    "haven",
    "highr",
    "hms",
    "htmltools",
    "htmlwidgets",
    "httr",
    "httr2",
    "ini",
    "isoband",
    "janitor",
    "jquerylib",
    "jsonlite",
    "knitr",
    "labeling",
    "labelled",
    "later",
    "lazyeval",
    "lifecycle",
    "lubridate",
    "madshapR",
    "magrittr",
    "memoise",
    "mime",
    "opalr",
    "openssl",
    "otel",
    "pillar",
    "pkgconfig",
    "prettyunits",
    "progress",
    "promises",
    "purrr",
    "R6",
    "rappdirs",
    "RColorBrewer",
    "Rcpp",
    "readr",
    "readxl",
    "rematch",
    "rlang",
    "rmarkdown",
    "rprojroot",
    "rstudioapi",
    "S7",
    "sass",
    "scales",
    "snakecase",
    "stringi",
    "stringr",
    "sys",
    "tibble",
    "tidyr",
    "tidyselect",
    "timechange",
    "tinytex",
    "tzdb",
    "usethis",
    "utf8",
    "vctrs",
    "viridisLite",
    "vroom",
    "whisker",
    "withr",
    "writexl",
    "xfun",
    "yaml",
    "zip"
  ],
  "_vignettes": [
    {
      "source": "mlstrOpalr-vignette.Rmd",
      "filename": "mlstrOpalr-vignette.html",
      "title": "mlstrOpalr-vignette",
      "engine": "knitr::rmarkdown",
      "headings": [
        "mlstrOpalr",
        "Get started",
        "Install the package"
      ],
      "created": "2023-06-20 17:26:54",
      "modified": "2024-05-02 16:18:05",
      "commits": 2
    }
  ],
  "_score": 4,
  "_indexed": true,
  "_nocasepkg": "mlstropalr",
  "_universes": [
    "maelstrom-research",
    "guifabre"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.0.3",
      "date": "2026-06-23T07:47:24.000Z",
      "distro": "noble",
      "commit": "fbb2a0f47646a0e0a727b26ce96a14a0c3d689df",
      "fileid": "a24aef4adb9a1eea82e45aff8b2d41ed3f98940c986b4ba14dfa8552970c5054",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/maelstrom-research/actions/runs/28010414535"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.0.3",
      "date": "2026-06-23T07:47:03.000Z",
      "distro": "noble",
      "commit": "fbb2a0f47646a0e0a727b26ce96a14a0c3d689df",
      "fileid": "85a5f3e2693ca872963858bd71f619c73f0fd135b58bf6354cb926d0c7a62aea",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/maelstrom-research/actions/runs/28010414535"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.0.3",
      "date": "2026-06-23T07:46:32.000Z",
      "commit": "fbb2a0f47646a0e0a727b26ce96a14a0c3d689df",
      "fileid": "40f21d8feeba4b5207689bd72569f5e40cbbb8b6baaccff3d956df6266f94103",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/maelstrom-research/actions/runs/28010414535"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.0.3",
      "date": "2026-06-23T07:46:20.000Z",
      "commit": "fbb2a0f47646a0e0a727b26ce96a14a0c3d689df",
      "fileid": "70b1827195448675dab2518a741856cc8559f570c7216a6e0347ee2a2354aa0e",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/maelstrom-research/actions/runs/28010414535"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.0.3",
      "date": "2026-06-23T07:47:07.000Z",
      "commit": "fbb2a0f47646a0e0a727b26ce96a14a0c3d689df",
      "fileid": "694a50b873efa560da328239a6747df1f6d55ceef556817599a670432cb835dc",
      "status": "success",
      "buildurl": "https://github.com/r-universe/maelstrom-research/actions/runs/28010414535"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.0.3",
      "date": "2026-06-23T07:45:58.000Z",
      "commit": "fbb2a0f47646a0e0a727b26ce96a14a0c3d689df",
      "fileid": "fc57baf6003843801d94292a786927edd3903c8f35ad5cc41b265c8ffa5b9f89",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/maelstrom-research/actions/runs/28010414535"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.0.3",
      "date": "2026-06-23T07:46:08.000Z",
      "commit": "fbb2a0f47646a0e0a727b26ce96a14a0c3d689df",
      "fileid": "5061337b0aa81f905e4692724eb6ba938f4eeba5e4b9a76f04bc8a647b8cb53a",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/maelstrom-research/actions/runs/28010414535"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.0.3",
      "date": "2026-06-23T07:46:07.000Z",
      "commit": "fbb2a0f47646a0e0a727b26ce96a14a0c3d689df",
      "fileid": "f60e5500b6ca9c0d4a69ccd9ce9f1fe55f67c25e7e8922030f00b1cec7162aa1",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/maelstrom-research/actions/runs/28010414535"
    }
  ]
}