{
  "_id": "6a61b064f673e46fff56dcf7",
  "Package": "mlstrOpalr",
  "Type": "Package",
  "Title": "Support Compatibility Between 'Maelstrom' R Packages and 'Opal'\nEnvironment",
  "Version": "1.0.3",
  "Authors@R": "c(person(given = \"Guillaume\",\nfamily = \"Fabre\",\nrole = c(\"aut\",\"cre\"),\nemail = \"guijoseph.fabre@gmail.com\",\ncomment = c(ORCID = \"0000-0002-0124-9970\")),\nperson(\"Maelstrom-research group\",\nrole=c(\"fnd\",\"cph\"),\nemail=\"info@maelstrom-research.org\"),\nperson(\"OBiBa group\",\nrole=\"ctb\",\nemail=\"info@obiba.org\"))",
  "Maintainer": "Guillaume Fabre <guijoseph.fabre@gmail.com>",
  "Description": "Functions to support compatibility between 'Maelstrom' R\npackages and 'Opal' environment. 'Opal' is the 'OBiBa' core\ndatabase application for biobanks. It is used to build data\nrepositories that integrates data collected from multiple\nsources. 'Opal Maelstrom' is a specific implementation of this\nsoftware. This 'Opal' client is specifically designed to\ninteract with 'Opal Maelstrom' distributions to perform\noperations on the R server side. The user must have adequate\ncredentials. Please see <https://opaldoc.obiba.org/> for\ncomplete documentation.",
  "License": "GPL-3",
  "LazyData": "true",
  "URL": "https://github.com/maelstrom-research/mlstrOpalr",
  "BugReports": "https://github.com/maelstrom-research/mlstrOpalr/issues",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.2.3",
  "VignetteBuilder": "knitr",
  "Encoding": "UTF-8",
  "Language": "en-US",
  "Config/pak/sysreqs": "cmake git make libgit2-dev libicu-dev libuv1-dev\nlibssl-dev libx11-dev zlib1g-dev",
  "Repository": "https://maelstrom-research.r-universe.dev",
  "Date/Publication": "2024-05-02 16:18:05 UTC",
  "RemoteUrl": "https://github.com/maelstrom-research/mlstropalr",
  "RemoteRef": "HEAD",
  "RemoteSha": "fbb2a0f47646a0e0a727b26ce96a14a0c3d689df",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-07-23 06:07:11 UTC",
    "User": "root"
  },
  "Author": "Guillaume Fabre [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-0124-9970>),\nMaelstrom-research group [fnd, cph],\nOBiBa group [ctb]",
  "_user": "maelstrom-research",
  "_type": "src",
  "_file": "mlstrOpalr_1.0.3.tar.gz",
  "_fileid": "https://r2.ropensci.org/da128c48d5cb950129e2ff83b767f6700055e46e989d266839c5442ca4cb00bd",
  "_filesize": 136546,
  "_sha256": "da128c48d5cb950129e2ff83b767f6700055e46e989d266839c5442ca4cb00bd",
  "_expires": "2026-10-31T06:10:42.000Z",
  "_created": "2026-07-23T06:07:11.000Z",
  "_published": "2026-07-23T06:10:44.297Z",
  "_jobs": [
    {
      "job": 89132037603,
      "time": 167,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8554354417"
    },
    {
      "job": 89132037611,
      "time": 157,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8554351056"
    },
    {
      "job": 89132037586,
      "time": 95,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "8554332288"
    },
    {
      "job": 89132037688,
      "time": 103,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8554334805"
    },
    {
      "job": 89131410154,
      "time": 236,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8554301494"
    },
    {
      "job": 89132037591,
      "time": 173,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "8554355338"
    },
    {
      "job": 89132037614,
      "time": 153,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8554350176"
    },
    {
      "job": 89132037617,
      "time": 104,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "8554334840"
    },
    {
      "job": 89132037602,
      "time": 101,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8554334377"
    }
  ],
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/maelstrom-research/actions/runs/29983864841",
  "_status": "success",
  "_upstream": "https://github.com/maelstrom-research/mlstropalr",
  "_commit": {
    "id": "fbb2a0f47646a0e0a727b26ce96a14a0c3d689df",
    "author": "GuiFabre <51246435+GuiFabre@users.noreply.github.com>",
    "committer": "GitHub <noreply@github.com>",
    "message": "Merge pull request #10 from maelstrom-research/testing\n\nTesting",
    "time": 1714666685
  },
  "_maintainer": {
    "name": "Guillaume Fabre",
    "email": "guijoseph.fabre@gmail.com",
    "login": "guifabre",
    "description": "",
    "uuid": 51246435,
    "orcid": "0000-0002-0124-9970"
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.4",
      "role": "Depends"
    },
    {
      "package": "dplyr",
      "version": ">= 1.1.0",
      "role": "Imports"
    },
    {
      "package": "rlang",
      "role": "Imports"
    },
    {
      "package": "tidyr",
      "role": "Imports"
    },
    {
      "package": "stringr",
      "role": "Imports"
    },
    {
      "package": "tools",
      "role": "Imports"
    },
    {
      "package": "opalr",
      "role": "Imports"
    },
    {
      "package": "fabR",
      "version": ">= 2.0.0",
      "role": "Imports"
    },
    {
      "package": "madshapR",
      "version": ">= 1.0.2",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    }
  ],
  "_owner": "maelstrom-research",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 2,
  "_contributors": [
    {
      "user": "guifabre",
      "count": 33,
      "uuid": 51246435
    },
    {
      "user": "ymarcon",
      "count": 3,
      "uuid": 2581149
    }
  ],
  "_userbio": {
    "uuid": 6654221,
    "type": "organization",
    "name": "Maelstrom Research",
    "followers": 10
  },
  "_downloads": {
    "count": 176,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/mlstrOpalr"
  },
  "_devurl": "https://github.com/maelstrom-research/mlstropalr",
  "_searchresults": 4,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/mlstrOpalr.html",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/maelstrom-research/mlstropalr",
  "_realowner": "maelstrom-research",
  "_cranurl": true,
  "_releases": [
    {
      "version": "1.0.0",
      "date": "2023-06-23"
    },
    {
      "version": "1.0.1",
      "date": "2023-07-07"
    },
    {
      "version": "1.0.2",
      "date": "2023-10-11"
    },
    {
      "version": "1.0.3",
      "date": "2024-05-01"
    }
  ],
  "_exports": [
    "data_dict_opalr_fix",
    "mlstrOpalr_help",
    "opal_files_pull",
    "opal_files_push",
    "opal_project_create",
    "opal_tables_pull",
    "opal_tables_push",
    "taxonomy_opal_get",
    "taxonomy_opal_mlstr_get"
  ],
  "_datasets": [
    {
      "name": "valueType_list",
      "title": "Built-in tibble of allowed valueType values",
      "object": "valueType_list",
      "class": [
        "tbl_df",
        "tbl",
        "data.frame"
      ],
      "fields": [
        "valueType",
        "typeof",
        "class",
        "call",
        "toValueType",
        "toTypeof",
        "genericType"
      ],
      "rows": 12,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "data_dict_opalr_fix",
      "title": "Transform a data dictionary object from 'opalr' format to Opal format",
      "topics": [
        "data_dict_opalr_fix"
      ]
    },
    {
      "page": "mlstrOpalr_help",
      "title": "Call the help center for full documentation",
      "topics": [
        "mlstrOpalr_help"
      ]
    },
    {
      "page": "opal_files_pull",
      "title": "Download files from an Opal environment",
      "topics": [
        "opal_files_pull"
      ]
    },
    {
      "page": "opal_files_push",
      "title": "Upload files to an Opal environment",
      "topics": [
        "opal_files_push"
      ]
    },
    {
      "page": "opal_project_create",
      "title": "Create a project in an Opal environment",
      "topics": [
        "opal_project_create"
      ]
    },
    {
      "page": "opal_tables_pull",
      "title": "Download tables from an Opal project as a dossier",
      "topics": [
        "opal_tables_pull"
      ]
    },
    {
      "page": "opal_tables_push",
      "title": "Upload datasets into an Opal environment as tables in an Opal project",
      "topics": [
        "opal_tables_push"
      ]
    },
    {
      "page": "taxonomy_opal_get",
      "title": "Get available taxonomies in format used by Opal",
      "topics": [
        "taxonomy_opal_get"
      ]
    },
    {
      "page": "taxonomy_opal_mlstr_get",
      "title": "Get available taxonomies in format used by Maelstrom Research",
      "topics": [
        "taxonomy_opal_mlstr_get"
      ]
    },
    {
      "page": "valueType_list",
      "title": "Built-in tibble of allowed valueType values",
      "topics": [
        "valueType_list"
      ]
    }
  ],
  "_readme": "https://github.com/maelstrom-research/mlstropalr/raw/HEAD/README.md",
  "_rundeps": [
    "askpass",
    "base64enc",
    "bit",
    "bit64",
    "bookdown",
    "bslib",
    "cachem",
    "cellranger",
    "cli",
    "clipr",
    "cpp11",
    "crayon",
    "credentials",
    "crosstalk",
    "curl",
    "desc",
    "digest",
    "dplyr",
    "DT",
    "evaluate",
    "fabR",
    "farver",
    "fastmap",
    "fontawesome",
    "forcats",
    "fs",
    "generics",
    "gert",
    "ggplot2",
    "gitcreds",
    "glue",
    "gtable",
    "haven",
    "highr",
    "hms",
    "htmltools",
    "htmlwidgets",
    "httr",
    "httr2",
    "ini",
    "isoband",
    "janitor",
    "jquerylib",
    "jsonlite",
    "knitr",
    "labeling",
    "labelled",
    "later",
    "lazyeval",
    "lifecycle",
    "lubridate",
    "madshapR",
    "magrittr",
    "memoise",
    "mime",
    "opalr",
    "openssl",
    "otel",
    "pillar",
    "pkgconfig",
    "prettyunits",
    "progress",
    "promises",
    "purrr",
    "R6",
    "rappdirs",
    "RColorBrewer",
    "Rcpp",
    "readr",
    "readxl",
    "rematch",
    "rlang",
    "rmarkdown",
    "rprojroot",
    "rstudioapi",
    "S7",
    "sass",
    "scales",
    "snakecase",
    "stringi",
    "stringr",
    "sys",
    "tibble",
    "tidyr",
    "tidyselect",
    "timechange",
    "tinytex",
    "tzdb",
    "usethis",
    "utf8",
    "vctrs",
    "viridisLite",
    "vroom",
    "whisker",
    "withr",
    "writexl",
    "xfun",
    "yaml",
    "zip"
  ],
  "_vignettes": [
    {
      "source": "mlstrOpalr-vignette.Rmd",
      "filename": "mlstrOpalr-vignette.html",
      "title": "mlstrOpalr-vignette",
      "engine": "knitr::rmarkdown",
      "headings": [
        "mlstrOpalr",
        "Get started",
        "Install the package"
      ],
      "created": "2023-06-20 17:26:54",
      "modified": "2024-05-02 16:18:05",
      "commits": 2
    }
  ],
  "_score": 4,
  "_indexed": true,
  "_nocasepkg": "mlstropalr",
  "_universes": [
    "maelstrom-research",
    "guifabre"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.0.3",
      "date": "2026-07-23T06:09:43.000Z",
      "distro": "resolute",
      "commit": "fbb2a0f47646a0e0a727b26ce96a14a0c3d689df",
      "fileid": "https://r2.ropensci.org/7af199f976f367b16ae8ee126f293a53a58c9b032ce8cfbf044d7e4bc460f89e",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/maelstrom-research/actions/runs/29983864841"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.0.3",
      "date": "2026-07-23T06:09:37.000Z",
      "distro": "resolute",
      "commit": "fbb2a0f47646a0e0a727b26ce96a14a0c3d689df",
      "fileid": "https://r2.ropensci.org/3e14537142d66871901d4d5d5c9b610c2a5da1b9202958593809532c46a59526",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/maelstrom-research/actions/runs/29983864841"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.0.3",
      "date": "2026-07-23T06:08:45.000Z",
      "commit": "fbb2a0f47646a0e0a727b26ce96a14a0c3d689df",
      "fileid": "https://r2.ropensci.org/a6702eb94135c216099e82deba6f7265f1af24882cbf71276fef810d9b8d1f8c",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/maelstrom-research/actions/runs/29983864841"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.0.3",
      "date": "2026-07-23T06:08:48.000Z",
      "commit": "fbb2a0f47646a0e0a727b26ce96a14a0c3d689df",
      "fileid": "https://r2.ropensci.org/20f1aac9ab1ff4ff37db447a9deecfd1579c233ec6cfa84dec93b8103952cf6c",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/maelstrom-research/actions/runs/29983864841"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.0.3",
      "date": "2026-07-23T06:10:19.000Z",
      "commit": "fbb2a0f47646a0e0a727b26ce96a14a0c3d689df",
      "fileid": "https://r2.ropensci.org/826ab644ea31da42002c54089c9f5bf853ab7e7ab0efced2b9ac4c9b38115b90",
      "status": "success",
      "buildurl": "https://github.com/r-universe/maelstrom-research/actions/runs/29983864841"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.0.3",
      "date": "2026-07-23T06:09:28.000Z",
      "commit": "fbb2a0f47646a0e0a727b26ce96a14a0c3d689df",
      "fileid": "https://r2.ropensci.org/2b7e76b4b086cd8ce4d12b836c6d869cdae6c1361277d8fd28c6747d280c954c",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/maelstrom-research/actions/runs/29983864841"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.0.3",
      "date": "2026-07-23T06:08:36.000Z",
      "commit": "fbb2a0f47646a0e0a727b26ce96a14a0c3d689df",
      "fileid": "https://r2.ropensci.org/c71c1d7f0f3306bd2754f9e3e686b843239ff10d3840a754a71a31ddfd672553",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/maelstrom-research/actions/runs/29983864841"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.0.3",
      "date": "2026-07-23T06:08:30.000Z",
      "commit": "fbb2a0f47646a0e0a727b26ce96a14a0c3d689df",
      "fileid": "https://r2.ropensci.org/bb183d8c7fa5f76af6cbc35195fac57ba1805e222dd41c1695833ffeb8e53b5e",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/maelstrom-research/actions/runs/29983864841"
    }
  ]
}