{ "_id": "6a12ae25acfb0bcc41d18e7a", "Package": "mlstrOpalr", "Type": "Package", "Title": "Support Compatibility Between 'Maelstrom' R Packages and 'Opal'\nEnvironment", "Version": "1.0.3", "Authors@R": "c(person(given = \"Guillaume\",\nfamily = \"Fabre\",\nrole = c(\"aut\",\"cre\"),\nemail = \"guijoseph.fabre@gmail.com\",\ncomment = c(ORCID = \"0000-0002-0124-9970\")),\nperson(\"Maelstrom-research group\",\nrole=c(\"fnd\",\"cph\"),\nemail=\"info@maelstrom-research.org\"),\nperson(\"OBiBa group\",\nrole=\"ctb\",\nemail=\"info@obiba.org\"))", "Maintainer": "Guillaume Fabre ", "Description": "Functions to support compatibility between 'Maelstrom' R\npackages and 'Opal' environment. 'Opal' is the 'OBiBa' core\ndatabase application for biobanks. It is used to build data\nrepositories that integrates data collected from multiple\nsources. 'Opal Maelstrom' is a specific implementation of this\nsoftware. This 'Opal' client is specifically designed to\ninteract with 'Opal Maelstrom' distributions to perform\noperations on the R server side. The user must have adequate\ncredentials. Please see for\ncomplete documentation.", "License": "GPL-3", "LazyData": "true", "URL": "https://github.com/maelstrom-research/mlstrOpalr", "BugReports": "https://github.com/maelstrom-research/mlstrOpalr/issues", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.2.3", "VignetteBuilder": "knitr", "Encoding": "UTF-8", "Language": "en-US", "Config/pak/sysreqs": "cmake git make libgit2-dev libicu-dev libuv1-dev\nlibssl-dev libx11-dev zlib1g-dev", "Repository": "https://maelstrom-research.r-universe.dev", "Date/Publication": "2024-05-02 16:18:05 UTC", "RemoteUrl": "https://github.com/maelstrom-research/mlstropalr", "RemoteRef": "HEAD", "RemoteSha": "fbb2a0f47646a0e0a727b26ce96a14a0c3d689df", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-24 07:48:56 UTC", "User": "root" }, "Author": "Guillaume Fabre [aut, cre] (ORCID:\n),\nMaelstrom-research group [fnd, cph],\nOBiBa group [ctb]", "MD5sum": "d2bf68d2b908e769b25ab82b685e0908", "_user": "maelstrom-research", "_type": "src", "_file": "mlstrOpalr_1.0.3.tar.gz", "_fileid": "e39b8571eba6f45c65a30e63224fa4e1693e0a2de24e4d029eb6a95f60171a46", "_filesize": 135469, "_sha256": "e39b8571eba6f45c65a30e63224fa4e1693e0a2de24e4d029eb6a95f60171a46", "_created": "2026-05-24T07:48:56.000Z", "_published": "2026-05-24T07:52:05.451Z", "_distro": "noble", "_jobs": [ { "job": 77581561197, "time": 151, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7183415162" }, { "job": 77581561204, "time": 159, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7183415959" }, { "job": 77581561200, "time": 98, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7183409433" }, { "job": 77581561213, "time": 97, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7183409190" }, { "job": 77581403188, "time": 187, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7183398948" }, { "job": 77581561231, "time": 159, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7183415638" }, { "job": 77581561235, "time": 116, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7183411318" }, { "job": 77581561210, "time": 135, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7183413281" }, { "job": 77581561232, "time": 98, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7183409382" } ], "_buildurl": "https://github.com/r-universe/maelstrom-research/actions/runs/26355504913", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/maelstrom-research/mlstropalr", "_commit": { "id": "fbb2a0f47646a0e0a727b26ce96a14a0c3d689df", "author": "GuiFabre <51246435+GuiFabre@users.noreply.github.com>", "committer": "GitHub ", "message": "Merge pull request #10 from maelstrom-research/testing\n\nTesting", "time": 1714666685 }, "_maintainer": { "name": "Guillaume Fabre", "email": "guijoseph.fabre@gmail.com", "login": "guifabre", "description": "", "uuid": 51246435, "orcid": "0000-0002-0124-9970" }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.4", "role": "Depends" }, { "package": "dplyr", "version": ">= 1.1.0", "role": "Imports" }, { "package": "rlang", "role": "Imports" }, { "package": "tidyr", "role": "Imports" }, { "package": "stringr", "role": "Imports" }, { "package": "tools", "role": "Imports" }, { "package": "opalr", "role": "Imports" }, { "package": "fabR", "version": ">= 2.0.0", "role": "Imports" }, { "package": "madshapR", "version": ">= 1.0.2", "role": "Imports" }, { "package": "knitr", "role": "Suggests" } ], "_owner": "maelstrom-research", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 2, "_contributors": [ { "user": "guifabre", "count": 33, "uuid": 51246435 }, { "user": "ymarcon", "count": 3, "uuid": 2581149 } ], "_userbio": { "uuid": 6654221, "type": "organization", "name": "Maelstrom Research" }, "_downloads": { "count": 175, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/mlstrOpalr" }, "_devurl": "https://github.com/maelstrom-research/mlstropalr", "_searchresults": 3, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/mlstrOpalr.html", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_homeurl": "https://github.com/maelstrom-research/mlstropalr", "_realowner": "maelstrom-research", "_cranurl": true, "_releases": [ { "version": "1.0.0", "date": "2023-06-23" }, { "version": "1.0.1", "date": "2023-07-07" }, { "version": "1.0.2", "date": "2023-10-11" }, { "version": "1.0.3", "date": "2024-05-01" } ], "_exports": [ "data_dict_opalr_fix", "mlstrOpalr_help", "opal_files_pull", "opal_files_push", "opal_project_create", "opal_tables_pull", "opal_tables_push", "taxonomy_opal_get", "taxonomy_opal_mlstr_get" ], "_datasets": [ { "name": "valueType_list", "title": "Built-in tibble of allowed valueType values", "object": "valueType_list", "class": [ "tbl_df", "tbl", "data.frame" ], "fields": [ "valueType", "typeof", "class", "call", "toValueType", "toTypeof", "genericType" ], "rows": 12, "table": true, "tojson": true } ], "_help": [ { "page": "data_dict_opalr_fix", "title": "Transform a data dictionary object from 'opalr' format to Opal format", "topics": [ "data_dict_opalr_fix" ] }, { "page": "mlstrOpalr_help", "title": "Call the help center for full documentation", "topics": [ "mlstrOpalr_help" ] }, { "page": "opal_files_pull", "title": "Download files from an Opal environment", "topics": [ "opal_files_pull" ] }, { "page": "opal_files_push", "title": "Upload files to an Opal environment", "topics": [ "opal_files_push" ] }, { "page": "opal_project_create", "title": "Create a project in an Opal environment", "topics": [ "opal_project_create" ] }, { "page": "opal_tables_pull", "title": "Download tables from an Opal project as a dossier", "topics": [ "opal_tables_pull" ] }, { "page": "opal_tables_push", "title": "Upload datasets into an Opal environment as tables in an Opal project", "topics": [ "opal_tables_push" ] }, { "page": "taxonomy_opal_get", "title": "Get available taxonomies in format used by Opal", "topics": [ "taxonomy_opal_get" ] }, { "page": "taxonomy_opal_mlstr_get", "title": "Get available taxonomies in format used by Maelstrom Research", "topics": [ "taxonomy_opal_mlstr_get" ] }, { "page": "valueType_list", "title": "Built-in tibble of allowed valueType values", "topics": [ "valueType_list" ] } ], "_readme": "https://github.com/maelstrom-research/mlstropalr/raw/HEAD/README.md", "_rundeps": [ "askpass", "base64enc", "bit", "bit64", "bookdown", "bslib", "cachem", "cellranger", "cli", "clipr", "cpp11", "crayon", "credentials", "crosstalk", "curl", "desc", "digest", "dplyr", "DT", "evaluate", "fabR", "farver", "fastmap", "fontawesome", "forcats", "fs", "generics", "gert", "ggplot2", "gh", "gitcreds", "glue", "gtable", "haven", "highr", "hms", "htmltools", "htmlwidgets", "httr", "httr2", "ini", "isoband", "janitor", "jquerylib", "jsonlite", "knitr", "labeling", "labelled", "later", "lazyeval", "lifecycle", "lubridate", "madshapR", "magrittr", "memoise", "mime", "opalr", "openssl", "otel", "pillar", "pkgconfig", "prettyunits", "progress", "promises", "purrr", "R6", "rappdirs", "RColorBrewer", "Rcpp", "readr", "readxl", "rematch", "rlang", "rmarkdown", "rprojroot", "rstudioapi", "S7", "sass", "scales", "snakecase", "stringi", "stringr", "sys", "tibble", "tidyr", "tidyselect", "timechange", "tinytex", "tzdb", "usethis", "utf8", "vctrs", "viridisLite", "vroom", "whisker", "withr", "writexl", "xfun", "yaml", "zip" ], "_vignettes": [ { "source": "mlstrOpalr-vignette.Rmd", "filename": "mlstrOpalr-vignette.html", "title": "mlstrOpalr-vignette", "engine": "knitr::rmarkdown", "headings": [ "mlstrOpalr", "Get started", "Install the package" ], "created": "2023-06-20 17:26:54", "modified": "2024-05-02 16:18:05", "commits": 2 } ], "_score": 4, "_indexed": true, "_nocasepkg": "mlstropalr", "_universes": [ "maelstrom-research", "guifabre" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.0.3", "date": "2026-05-24T07:51:07.000Z", "distro": "noble", "commit": "fbb2a0f47646a0e0a727b26ce96a14a0c3d689df", "fileid": "b68dbd047d3c404d08fc3fa366ce6c0b7e84b2c168cfaf30dd79e91773a24e44", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/maelstrom-research/actions/runs/26355504913" }, { "r": "4.6.0", "os": "linux", "version": "1.0.3", "date": "2026-05-24T07:51:18.000Z", "distro": "noble", "commit": "fbb2a0f47646a0e0a727b26ce96a14a0c3d689df", "fileid": "f43edd20ec7bbeac8ea00a3fce22e9ebb0d02e297a4a28e959df855dc0ea6cbe", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/maelstrom-research/actions/runs/26355504913" }, { "r": "4.5.3", "os": "mac", "version": "1.0.3", "date": "2026-05-24T07:50:31.000Z", "commit": "fbb2a0f47646a0e0a727b26ce96a14a0c3d689df", "fileid": "20ce43bd8b8c864f3495280c987fe0e444024f3bfdd6ff2e1eb14acf418b4917", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/maelstrom-research/actions/runs/26355504913" }, { "r": "4.6.0", "os": "mac", "version": "1.0.3", "date": "2026-05-24T07:50:25.000Z", "commit": "fbb2a0f47646a0e0a727b26ce96a14a0c3d689df", "fileid": "2cc3ddf0fc552a5cb7b98baa9847fcdb410854859ebd948d93c7a877706eaa3b", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/maelstrom-research/actions/runs/26355504913" }, { "r": "4.6.0", "os": "wasm", "version": "1.0.3", "date": "2026-05-24T07:51:48.000Z", "commit": "fbb2a0f47646a0e0a727b26ce96a14a0c3d689df", "fileid": "1f2c5aadbfc313d3446a64adb50d82dae61c308aa1dde95bcedd4e9ac549ec9e", "status": "success", "buildurl": "https://github.com/r-universe/maelstrom-research/actions/runs/26355504913" }, { "r": "4.7.0", "os": "win", "version": "1.0.3", "date": "2026-05-24T07:50:27.000Z", "commit": "fbb2a0f47646a0e0a727b26ce96a14a0c3d689df", "fileid": "a615f0b6f654956ca252a699e8f5702ba33a8206e393cab5981fde7bdc37035e", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/maelstrom-research/actions/runs/26355504913" }, { "r": "4.5.3", "os": "win", "version": "1.0.3", "date": "2026-05-24T07:50:46.000Z", "commit": "fbb2a0f47646a0e0a727b26ce96a14a0c3d689df", "fileid": "4566514762bf3862ffc67919e8b2d9a68031a7a74593b46f7353757caad2d3d0", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/maelstrom-research/actions/runs/26355504913" }, { "r": "4.6.0", "os": "win", "version": "1.0.3", "date": "2026-05-24T07:50:10.000Z", "commit": "fbb2a0f47646a0e0a727b26ce96a14a0c3d689df", "fileid": "6d78b8ca76e2579aaf9f7f30e79a60b2f088b114054f6054fa39570ddd8f496a", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/maelstrom-research/actions/runs/26355504913" } ] }